Snakeface
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The Snakeface API
Internal API
Snakeface
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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J
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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Y
A
active (snakeface.apps.users.models.User attribute)
add_date (snakeface.apps.main.models.Workflow attribute)
(snakeface.apps.main.models.WorkflowStatus attribute)
add_staff() (snakeface.apps.users.models.CustomUserManager method)
add_superuser() (snakeface.apps.users.models.CustomUserManager method)
agree_terms (snakeface.apps.users.models.User attribute)
agree_terms_date (snakeface.apps.users.models.User attribute)
AllowAnyGet (class in snakeface.apps.api.permissions)
async_get_statuses() (in module snakeface.apps.main.consumers)
auth_token (snakeface.apps.users.models.User attribute)
B
base_fields (snakeface.apps.main.forms.WorkflowForm attribute)
(snakeface.apps.users.forms.TokenForm attribute)
BLACK (snakeface.logger.ColorizingStreamHandler attribute)
BLUE (snakeface.logger.ColorizingStreamHandler attribute)
BOLD_SEQ (snakeface.logger.ColorizingStreamHandler attribute)
boolean_field() (snakeface.argparser.SnakefaceArgument method)
C
can_color_tty() (snakeface.logger.ColorizingStreamHandler method)
check_user_authentication() (in module snakeface.apps.api.permissions)
choice_field() (snakeface.argparser.SnakefaceArgument method)
cleanup() (snakeface.logger.Logger method)
COLOR_SEQ (snakeface.logger.ColorizingStreamHandler attribute)
ColorizingStreamHandler (class in snakeface.logger)
colors (snakeface.logger.ColorizingStreamHandler attribute)
command (snakeface.apps.main.models.Workflow attribute)
command() (snakeface.argparser.SnakefaceParser property)
CommandRunner (class in snakeface.apps.main.utils)
connect() (snakeface.apps.main.consumers.WorkflowConsumer method)
contributors (snakeface.apps.main.models.Workflow attribute)
create_auth_token() (in module snakeface.apps.users.models)
create_superuser() (snakeface.apps.users.models.CustomUserManager method)
create_user() (snakeface.apps.users.models.CustomUserManager method)
CreateWorkflow (class in snakeface.apps.api.views)
CustomUserManager (class in snakeface.apps.users.models)
CYAN (snakeface.logger.ColorizingStreamHandler attribute)
D
dag (snakeface.apps.main.models.Workflow attribute)
data (snakeface.apps.main.models.Workflow attribute)
db_type() (snakeface.apps.main.models.JSONField method)
debug() (snakeface.logger.Logger method)
declared_fields (snakeface.apps.main.forms.WorkflowForm attribute)
(snakeface.apps.users.forms.TokenForm attribute)
decorate() (snakeface.logger.ColorizingStreamHandler method)
disconnect() (snakeface.apps.main.consumers.WorkflowConsumer method)
doRun() (in module snakeface.apps.main.tasks)
E
edit_or_update_workflow() (in module snakeface.apps.main.views)
emit() (snakeface.logger.ColorizingStreamHandler method)
error (snakeface.apps.main.models.Workflow attribute)
error() (snakeface.logger.Logger method)
errors() (snakeface.argparser.SnakefaceParser property)
exit() (snakeface.logger.Logger method)
F
field() (snakeface.argparser.SnakefaceArgument method)
field_name() (snakeface.argparser.SnakefaceArgument property)
fields (snakeface.apps.main.forms.WorkflowForm.Meta attribute)
from_db_value() (snakeface.apps.main.models.JSONField method)
G
generate_secret_key() (in module snakeface.settings)
get() (snakeface.apps.api.views.CreateWorkflow method)
(snakeface.apps.api.views.ServiceInfo method)
(snakeface.argparser.SnakefaceParser method)
get_absolute_url() (snakeface.apps.main.models.Workflow method)
get_credentials() (snakeface.apps.users.models.User method)
get_label() (snakeface.apps.main.models.Workflow method)
(snakeface.apps.users.models.User method)
get_next_by_add_date() (snakeface.apps.main.models.Workflow method)
(snakeface.apps.main.models.WorkflowStatus method)
get_next_by_date_joined() (snakeface.apps.users.models.User method)
get_next_by_modify_date() (snakeface.apps.main.models.Workflow method)
(snakeface.apps.main.models.WorkflowStatus method)
get_notebook_token() (in module snakeface.apps.users.utils)
get_notebook_user() (in module snakeface.apps.users.utils)
get_or_create_notebook_user() (in module snakeface.apps.users.utils)
get_parser() (in module snakeface.client)
get_prep_value() (snakeface.apps.main.models.JSONField method)
get_previous_by_add_date() (snakeface.apps.main.models.Workflow method)
(snakeface.apps.main.models.WorkflowStatus method)
get_previous_by_date_joined() (snakeface.apps.users.models.User method)
get_previous_by_modify_date() (snakeface.apps.main.models.Workflow method)
(snakeface.apps.main.models.WorkflowStatus method)
get_private_display() (snakeface.apps.main.models.Workflow method)
get_providers() (snakeface.apps.users.models.User method)
get_report() (snakeface.apps.main.models.Workflow method)
get_snakefile_choices() (in module snakeface.apps.main.utils)
get_status_display() (snakeface.apps.main.models.Workflow method)
get_statuses() (in module snakeface.apps.main.consumers)
get_tmpfile() (in module snakeface.apps.main.utils)
get_token() (in module snakeface.apps.api.permissions)
get_username() (in module snakeface.apps.users.utils)
get_workdir_choices() (in module snakeface.apps.main.utils)
GREEN (snakeface.logger.ColorizingStreamHandler attribute)
groups (snakeface.apps.users.models.User attribute)
groups() (snakeface.argparser.SnakefaceParser property)
H
handler() (snakeface.logger.Logger method)
has_create_permission() (snakeface.apps.users.models.User method)
has_edit_permission() (snakeface.apps.main.models.Workflow method)
has_permission() (snakeface.apps.api.permissions.AllowAnyGet method)
has_report() (snakeface.apps.main.models.Workflow method)
has_view_permission() (snakeface.apps.main.models.Workflow method)
I
id (snakeface.apps.main.models.Workflow attribute)
(snakeface.apps.main.models.WorkflowStatus attribute)
(snakeface.apps.users.models.User attribute)
include_argument() (snakeface.argparser.SnakefaceParser method)
info() (snakeface.logger.Logger method)
is_boolean() (snakeface.argparser.SnakefaceArgument property)
is_tty() (snakeface.logger.ColorizingStreamHandler property)
J
JSONField (class in snakeface.apps.main.models)
L
load() (snakeface.argparser.SnakefaceParser method)
load_template() (snakeface.argparser.SnakefaceArgument method)
location() (snakeface.logger.Logger method)
logentry_set (snakeface.apps.users.models.User attribute)
Logger (class in snakeface.logger)
login_is_required() (in module snakeface.apps.users.decorators)
M
MAGENTA (snakeface.logger.ColorizingStreamHandler attribute)
main() (in module snakeface.client)
media() (snakeface.apps.main.forms.WorkflowForm property)
(snakeface.apps.users.forms.TokenForm property)
members() (snakeface.apps.main.models.Workflow property)
message_fields() (snakeface.apps.main.models.Workflow property)
model (snakeface.apps.main.forms.WorkflowForm.Meta attribute)
modify_date (snakeface.apps.main.models.Workflow attribute)
(snakeface.apps.main.models.WorkflowStatus attribute)
module
snakeface
snakeface.apps.api.permissions
snakeface.apps.api.urls
snakeface.apps.api.views
snakeface.apps.base.urls
snakeface.apps.base.views
snakeface.apps.main.consumers
snakeface.apps.main.forms
snakeface.apps.main.models
snakeface.apps.main.routing
snakeface.apps.main.tasks
snakeface.apps.main.urls
snakeface.apps.main.utils
snakeface.apps.main.views
snakeface.apps.users.decorators
snakeface.apps.users.forms
snakeface.apps.users.models
snakeface.apps.users.urls
snakeface.apps.users.utils
snakeface.apps.users.views
snakeface.argparser
snakeface.client
snakeface.logger
snakeface.settings
msg (snakeface.apps.main.models.WorkflowStatus attribute)
N
name (snakeface.apps.main.models.Workflow attribute)
notebook_login() (in module snakeface.apps.users.views)
notebook_token (snakeface.apps.users.models.User attribute)
O
objects (snakeface.apps.main.models.Workflow attribute)
(snakeface.apps.main.models.WorkflowStatus attribute)
(snakeface.apps.users.models.User attribute)
output (snakeface.apps.main.models.Workflow attribute)
owners (snakeface.apps.main.models.Workflow attribute)
P
post() (snakeface.apps.api.views.UpdateWorkflow method)
private (snakeface.apps.main.models.Workflow attribute)
progress() (snakeface.logger.Logger method)
R
ratelimit_block (snakeface.apps.api.views.CreateWorkflow attribute)
(snakeface.apps.api.views.ServiceInfo attribute)
(snakeface.apps.api.views.UpdateWorkflow attribute)
ratelimit_key (snakeface.apps.api.views.CreateWorkflow attribute)
(snakeface.apps.api.views.ServiceInfo attribute)
(snakeface.apps.api.views.UpdateWorkflow attribute)
ratelimit_method (snakeface.apps.api.views.CreateWorkflow attribute)
(snakeface.apps.api.views.ServiceInfo attribute)
(snakeface.apps.api.views.UpdateWorkflow attribute)
ratelimit_rate (snakeface.apps.api.views.CreateWorkflow attribute)
(snakeface.apps.api.views.ServiceInfo attribute)
(snakeface.apps.api.views.UpdateWorkflow attribute)
read_file() (in module snakeface.apps.main.utils)
reader() (snakeface.apps.main.utils.CommandRunner method)
receive() (snakeface.apps.main.consumers.WorkflowConsumer method)
RED (snakeface.logger.ColorizingStreamHandler attribute)
renderer_classes (snakeface.apps.api.views.CreateWorkflow attribute)
(snakeface.apps.api.views.ServiceInfo attribute)
(snakeface.apps.api.views.UpdateWorkflow attribute)
required() (snakeface.argparser.SnakefaceParser property)
reset() (snakeface.apps.main.models.Workflow method)
(snakeface.apps.main.utils.CommandRunner method)
RESET_SEQ (snakeface.logger.ColorizingStreamHandler attribute)
retval (snakeface.apps.main.models.Workflow attribute)
run_command() (snakeface.apps.main.utils.CommandRunner method)
run_is_allowed() (in module snakeface.apps.main.tasks)
run_workflow() (in module snakeface.apps.main.tasks)
S
serialize_workflow_statuses() (in module snakeface.apps.main.tasks)
ServiceInfo (class in snakeface.apps.api.views)
set() (snakeface.argparser.SnakefaceParser method)
set_level() (snakeface.logger.Logger method)
set_stream_handler() (snakeface.logger.Logger method)
set_workflow() (snakeface.apps.main.utils.ThreadRunner method)
Settings (class in snakeface.settings)
setup_logger() (in module snakeface.logger)
shellcmd() (snakeface.logger.Logger method)
snakeface
module
snakeface.apps.api.permissions
module
snakeface.apps.api.urls
module
snakeface.apps.api.views
module
snakeface.apps.base.urls
module
snakeface.apps.base.views
module
snakeface.apps.main.consumers
module
snakeface.apps.main.forms
module
snakeface.apps.main.models
module
snakeface.apps.main.routing
module
snakeface.apps.main.tasks
module
snakeface.apps.main.urls
module
snakeface.apps.main.utils
module
snakeface.apps.main.views
module
snakeface.apps.users.decorators
module
snakeface.apps.users.forms
module
snakeface.apps.users.models
module
snakeface.apps.users.urls
module
snakeface.apps.users.utils
module
snakeface.apps.users.views
module
snakeface.argparser
module
snakeface.client
module
snakeface.logger
module
snakeface.settings
module
SnakefaceArgument (class in snakeface.argparser)
SnakefaceParser (class in snakeface.argparser)
snakefile (snakeface.apps.main.models.Workflow attribute)
snakefile() (snakeface.argparser.SnakefaceParser property)
snakefiles (snakeface.argparser.SnakefaceParser attribute)
snakemake_id (snakeface.apps.main.models.Workflow attribute)
social_auth (snakeface.apps.users.models.User attribute)
status (snakeface.apps.main.models.Workflow attribute)
T
text_field() (snakeface.argparser.SnakefaceArgument method)
text_handler() (snakeface.logger.Logger method)
thread (snakeface.apps.main.models.Workflow attribute)
thread_id() (snakeface.apps.main.utils.ThreadRunner property)
ThreadRunner (class in snakeface.apps.main.utils)
to_dict() (snakeface.argparser.SnakefaceParser method)
to_python() (snakeface.apps.main.models.JSONField method)
token() (snakeface.apps.users.models.User property)
TokenForm (class in snakeface.apps.users.forms)
U
update_choice_fields() (snakeface.argparser.SnakefaceArgument method)
update_command() (snakeface.apps.main.models.Workflow method)
update_dag() (snakeface.apps.main.models.Workflow method)
update_workflow() (in module snakeface.apps.main.models)
update_workflow_status() (snakeface.apps.main.consumers.WorkflowConsumer method)
UpdateWorkflow (class in snakeface.apps.api.views)
User (class in snakeface.apps.users.models)
User.DoesNotExist
User.MultipleObjectsReturned
user_permissions (snakeface.apps.users.models.User attribute)
V
validate() (snakeface.argparser.SnakefaceParser method)
value_to_string() (snakeface.apps.main.models.JSONField method)
view_workflow_report() (in module snakeface.apps.main.views)
W
warmup() (in module snakeface.apps.base.views)
warning() (snakeface.logger.Logger method)
WHITE (snakeface.logger.ColorizingStreamHandler attribute)
workdir (snakeface.apps.main.models.Workflow attribute)
Workflow (class in snakeface.apps.main.models)
workflow (snakeface.apps.main.models.WorkflowStatus attribute)
Workflow.DoesNotExist
Workflow.MultipleObjectsReturned
workflow_contributors (snakeface.apps.users.models.User attribute)
workflow_id (snakeface.apps.main.models.WorkflowStatus attribute)
workflow_owners (snakeface.apps.users.models.User attribute)
WorkflowConsumer (class in snakeface.apps.main.consumers)
WorkflowForm (class in snakeface.apps.main.forms)
WorkflowForm.Meta (class in snakeface.apps.main.forms)
WorkflowStatus (class in snakeface.apps.main.models)
WorkflowStatus.DoesNotExist
WorkflowStatus.MultipleObjectsReturned
workflowstatus_set (snakeface.apps.main.models.Workflow attribute)
write_file() (in module snakeface.apps.main.utils)
Y
YELLOW (snakeface.logger.ColorizingStreamHandler attribute)
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