Snakeface¶

Snakeface is the Snakemake Interface, where you can easily run workflows. To learn more about Snakemake, visit the official documentation

Getting started with Snakemake Interface¶

Snakeface can be used on your local machine to provide a nice interface to running snakemake workflows, or deployed by a group to run shared workflows. See Use Cases for an overview of different use cases.

Support¶

In case of questions, please post on stack overflow.
To discuss with other Snakemake users, you can use the mailing list. Please do not post questions there. Use stack overflow for questions.
For bugs and feature requests, please use the issue tracker.
For contributions, visit Snakemake on Github.

Resources¶

Snakemake Repository: The Snakemake workflow manager repository houses the core software for Snakemake.
Snakemake Wrappers Repository: The Snakemake Wrapper Repository is a collection of reusable wrappers that allow to quickly use popular tools from Snakemake rules and workflows.
Snakemake Workflows Project: This project provides a collection of high quality modularized and re-usable workflows. The provided code should also serve as a best-practices of how to build production ready workflows with Snakemake. Everybody is invited to contribute.
Snakemake Profiles Project: This project provides Snakemake configuration profiles for various execution environments. Please consider contributing your own if it is still missing.
Bioconda: Bioconda can be used from Snakemake for creating completely reproducible workflows by defining the used software versions and providing binaries.